In this Collaborative Omics Logic Bioinformatics Metagenomics training program, we will explore how different types of analysis can be used to understand the microbial world. We will cover several bioinformatics approaches to the analysis of the microbiome. We will learn to compare microbial composition in different conditions, learn about the sequencing of viral samples, and discuss how microbes evade the immune response of the host as well as evade treatment. We will do so in the context of several projects taken from high impact publications.
History & Significance of 16s rRNA in Metagenomics,16S Metagenomic Sequencing Library Preparation: (Protocol Overview): Sample collection and preparation, DNA extraction, 16S rRNA bacterial Amplification,...
Understanding the Microbiome, Diversity, The Microbiome and Human Health, The gut microbiota, Gut health and the brain, Metabolome characterization
Microbiome variability and composition based on amplicon sequencing (DADA2 pipeline)
Hands-on Project Example 1: American Gut and the Human Microbiome Variability
Hands-on Project Example 2: Microbiome, Diet and Anxiety – the Gut-brain Axis
Online resources, file upload, download & analysis, Discussions, Troubleshooting, and Expert Feedback.
Discussions, Troubleshooting, suggestions and Expert Feedback.
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