OmicsLogic Metagenomics
Metagenomics is a relatively new field of research based on high-throughput sequencing (or Next Generation Sequencing) and it’s popularity signifies a growing appreciation for the composition of microbial communities (microbiomes) and the genetic information their genomes carry. Metagenomics allows us to study the microbiome in its natural environment and learn about the cooperative and often symbiotic relationships between prokaryotes, eukaryotes, viruses and archaea.
Upcoming Events
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29October
OmicsLogic Metagenomics Program overview
Session Topics: Overview of the entire course, Overview of the tools and resources for this program (edu.t-bio.info courses, projects and datasets, and the T-BioInfo...
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01November
16s metagenomics sequencing
Session Topics: History & Significance of 16s rRNA in Metagenomics,16S Metagenomic Sequencing Library Preparation: (Protocol Overview): Sample collection and preparation, DNA extraction, 16S rRNA...
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05November
Microbiome – functional bacterial community
Session Topics: Understanding the Microbiome, Diversity, The Microbiome and Human Health, The gut microbiota, Gut health and the brain, Metabolome characterization. This is an...
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08November
Analysis challenges – short reads, HVRs, OTUs
Session Topics:Overview of 16S metagenomics analysis, Pre-processing, data simulation, and error correction, Mapping to a reference database (Short overview), Generating the Abundance Table, Post-processing...
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12November
Mapping on databases
Session Topics: Mapping to a reference database (Detailed), Silva, Greengenes, NCBI – hypervariable regions of ribosomal RNA and full genome databases This is an...
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15November
DADA2 pipeline
Overview of DADA2, OTUs, Amplicon 16S/18S analysis algorithms, Pipeline demonstration, Data analysis and results. This is an event from the OmicsLogic Metagenomics program, you...
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15November
Metagenomics project & multiomics approach in Bioinformatics
Project details: Project from the edu site This is an event from the OmicsLogic Metagenomics program, you can register for the full program here: https://edu.t-bio.info/organizations/omicslogic-metagenomics/...
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10December
Bacterial populations- GWAS
Session Topics: How Genome Wide Association studies can be used to analyze microbial response to soil composition and identify other genotype-phenotype associations This is...
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13December
Viral genome detection in standard RNA-Seq
Session Topics: detection of viral genomes presence and estimation of contamination. Example: SF-9 project This is an event from the OmicsLogic Metagenomics program, you...
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17December
Phylogenetic analysis
Session Topics: Analysis of phylogenetic relationships between genomes to study evolutionary divergence based on select regions or genes. This is an event from the...
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20December
Drug resistance
Session Topics: Association of tuberculosis genomic variations with drug resistance mechanisms for antibiotic treatment This is an event from the OmicsLogic Metagenomics program, you...
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23December
Evolution, fitness and quasi species
Session Topics: Analysis of viral fitness in passages of viral populations to identify mutations responsible for adaptation. This is an event from the OmicsLogic...
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Joshua McKendall passed the course Crop drought stress and resistance 1 year ago
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Joshua McKendall finished the quiz Quiz 2 in the course Introduction to Genomics 1 year ago
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Beepsa Biswas posted an update in the group OmicsLogic Metagenomics 1 year ago
Session 11 Video
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suvi.ruuskanen finished the pipeline Ruuskanen_20191223 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen started the pipeline Ruuskanen_20191223 on server.t-bio.info 1 year, 1 month ago
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Ratnadeep Chowdhury finished the quiz Metagenomics Quiz 2 in the course Metagenomics 1 year, 1 month ago
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Ratnadeep Chowdhury started the quiz Metagenomics Quiz 2 in the course Metagenomics 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Ruuskanen_glypho_quail_fulldata_20191220C on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen started the pipeline Ruuskanen_glypho_quail_fulldata_20191220C on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Quail_glypho_fulldata_20191220 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen started the pipeline Quail_glypho_fulldata_20191220 on server.t-bio.info 1 year, 1 month ago
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Beepsa Biswas posted an update in the group OmicsLogic Metagenomics 1 year, 1 month ago
Session 10 Video
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Beepsa Biswas posted an update in the group OmicsLogic Metagenomics 1 year, 1 month ago
Session 9 Video
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suvi.ruuskanen finished the pipeline Quail gut test2 only QC on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen started the pipeline Quail gut test2 only QC on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Quail_gut_glypho_fulldata20191217 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen started the pipeline Quail_gut_glypho_fulldata20191217 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Quail Gut test1 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Quail Gut test1 on server.t-bio.info 1 year, 1 month ago
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suvi.ruuskanen finished the pipeline Quail Gut test1 on server.t-bio.info 1 year, 1 month ago
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